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In 2004 Jones signed a petition sponsored by the conspiratorial 9/11 Truthers.org alleging President [[George W. Bush]] and high-level government officials may have been behind 9/11.<ref>http://www.911truth.org/article.php?story=20041026093059633</ref><ref>https://www.washingtontimes.com/weblogs/back-story/2009/sep/03/green-jobs-czar-signed-truther-statement-in-2004/?feat=home_blogs</ref>

In 2004, Jones became a founding board member of the [[Apollo Alliance]] for "clean energy and green-collar jobs." [http://apolloalliance.org/blog/?tag=van-jones] [http://www.fundersnetwork.org/files/Looking_Forward_PDF_for_Viewing.pdf p.87] [[Jeff Jones]] of the [[Weather Underground]] is the New York State director of Apollo Alliance.