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This is the reason that [[Presuppositionalist Metaphysics|presuppositionalists]] do not subscribe to methodological naturalism, relying on the [[intelligent design]] Programme instead.  Presuppositionalists also contend that methodological naturalism is inherently [[atheistic]], since it would be a meaningless exercise to define the rules of empirical inquiry in an entirely arbitrary manner.  Since we define the rules of empirical inquiry in such a way that the ontological systematicness of the world is reflected in the method, the methodological naturalist's claim that methodological naturalism is independent of ontological naturalism is [[deceit|disingenuous]].
 
This is the reason that [[Presuppositionalist Metaphysics|presuppositionalists]] do not subscribe to methodological naturalism, relying on the [[intelligent design]] Programme instead.  Presuppositionalists also contend that methodological naturalism is inherently [[atheistic]], since it would be a meaningless exercise to define the rules of empirical inquiry in an entirely arbitrary manner.  Since we define the rules of empirical inquiry in such a way that the ontological systematicness of the world is reflected in the method, the methodological naturalist's claim that methodological naturalism is independent of ontological naturalism is [[deceit|disingenuous]].
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A complete list of the scientific breakthroughs that have been obtained without methodological naturalism follows.
    
==Defense==
 
==Defense==

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